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Container Camp Basics schedule (March 2023)

This page records the agenda of the 2023 Container Camp Basics, held March 6-8, 2023 (times are Mountain Standard Time, Arizona). The session times and instructor assignments are historical; the linked lessons remain available to work through on your own.

Day 1 - Introduction to Docker

Content
  • Introduction to Docker and its uses in reproducible science
  • Launching development environments on CodeSpaces for container testing
  • Using Docker on the commandline.
Goals
  • Introduction to containers & where to find them
  • Command line containers with CodeSpaces (optional: run locally)
  • Find and use official Docker images
Activities
Time (MST/AZ) Activity Instructor Outcome
09:00 Welcome All
09:05 Overview of Website Michele Code of Conduct
09:10 Why use Containers? Carlos What containers are used for in science
09:25 Start CodeSpace Tyson Using Dev Environments to create containers
09:30 Docker Commands and Execution Carlos Basic command line use of Docker
09:55 Break
10:00 Docker Commands and Execution Carlos & Tyson Basic command line use of Docker
10:55 Break
11:00 Managing Docker and Data Michele Volumes and Interactive Use inside containers
11:55 Break
12:00 Managing Docker and Data Michele & Tyson
12:55 Conclude for the day All push changes to your GitHub
Optional Homework
  • Test other Docker container images on CodeSpaces or locally

Day 2 - Building Docker Containers

Content
  • Use GitHub to browse for public Dockerfiles
  • Build Dockerfiles and push them to public registry
  • Use Version Control to set up automated container builds with GitHub Actions
Goals
  • Introduction to what Dockerfiles are and what you use them for
  • Start thinking about how to modify them for your own applications
Activities
Time (MST/AZ) Activity Instructor Notes
09:00 Welcome back All
09:05 Discuss previous day, answer questions
09:15 (re)start Dev Environment Tyson
09:20 Finding the right container Tyson
09:55 Break
10:00 Building Docker Images Carlos
10:55 Break
11:00 Using Docker Compose Michele
11:55 Break
12:00 Integrating your Containers into CyVerse Tyson
12:55 Conclude

Day 3 - Singularity, Orchestration, and Containers on the HPC

Content
  • Introduction to Singularity
  • Introduction to Kubernetes
Goals
  • Being able to execute containers on the HPC
  • Create a small Kubernetes cluster
Activities
Time (MST/AZ) Activity Instructor Notes
09:00 Welcome back All
09:05 Discuss previous day, answer questions
09:15 (re(re))start Dev Environment
09:20 Introduction to Singularity
09:30 Obtaining Singularity and the Singularity CLI
09:55 Break
10:00 Singularity Commands & Interacting with Singularity Images
10:55 Break
11:00 Singularity Images Continued*
11:55 Break
12:00 Integrating your Containers into CyVerse, questions, inquiries
12:55 Conclude**

* If we still have time, we will also discuss using Singularity on the HPC.

** For additional questions and inquiries, we will make time for one-on-ones on either Thursday or Friday (flexible schedule).

Adapted from CyVerse Container Camp (last source update 2023-07-27), CC BY 4.0. Spotted a problem? Open an issue.