# Documentation update log

## 2026-09-11

* **Update**: [Credits](https://unm-carc.github.io/foss/about/credits/) now lists the instructors' ORCID iDs.
* **Creation**: Migrated the CyVerse [Foundational Open Science Skills](https://github.com/CyVerse-learning-materials/foss){target=_blank} course (branch `mkdocs`, commit `86d4cc3`) from MkDocs Material to [Zensical](https://zensical.org){target=_blank}, structured as an Open Knowledge Format (OKF v0.2) bundle and restyled after the [CARC documentation](https://carc.unm.edu/docs/){target=_blank}. Every adapted page carries provenance frontmatter (`generated`, `sources` with per-file `last_modified`) and a source footer; all adapted pages are unverified pending CARC staff review.
* **Creation**: Reorganized the site into [Course information](https://unm-carc.github.io/foss/course/) (setup, the dated Fall 2025 [schedule](https://unm-carc.github.io/foss/course/schedule/), code of conduct, glossary), [Lessons](https://unm-carc.github.io/foss/lessons/) 1–9 plus [Extra: Workflows with Nextflow](https://unm-carc.github.io/foss/lessons/extra-nextflow/) (lesson 10 links to the external GPT 101 workshop), the [Capstone project](https://unm-carc.github.io/foss/capstone/), and [About](https://unm-carc.github.io/foss/about/) sections with kebab-case URLs. `MIGRATION.md` in the repository maps every old foss.cyverse.org URL to its new location.
* **Creation**: Wrote the landing page, section listings, [Credits and attribution](https://unm-carc.github.io/foss/about/credits/), [Contributing](https://unm-carc.github.io/foss/about/contributing/), and [For AI agents](https://unm-carc.github.io/foss/about/ai-agents/), and added the `llms.txt` / `llms-full.txt` agent indexes.
* **Update**: Aligned lesson titles with the Reproducibility I/II/III sequence (version control, software environments, containers) and renumbered the HPC lesson as 8 and the CyVerse lesson as 9 to match the schedule. Fixed broken internal links (to retired `00_basics`, `02_project_management`, `04_documentation_communication`, `06_reproducibility_i`, and `07_reproducibility_ii` pages, a `07_contaniers` typo, and a root-absolute shell-script link), converted YouTube embeds to privacy-enhanced, lazy-loading players, normalized admonition types, and replaced icons and emoji shortcodes that no longer render.
* **Update**: Refreshed outdated instructions: current Miniconda installer names, `ssh-keygen -t`, `docker run`, `apt-get install tree`, `mamba env create`, the Apptainer/SingularityCE history and `singularity` alias, and a Python 2 note. The Nextflow tutorial files now download from this site. Marked the University of Arizona HPC as one example system and added short tips for UNM CARC users to the [HPC](https://unm-carc.github.io/foss/lessons/08-hpc/), [containers](https://unm-carc.github.io/foss/lessons/07-containers/), and [software environments](https://unm-carc.github.io/foss/lessons/06-software-environments/) lessons.
* **Deletion**: Dropped the `archive/` lessons, the FOSS+ page, the GitHub Pages quick-start, the placeholder lesson 10 page, the chatbot widget, theme overrides, `CNAME`, Google Analytics, the Sphinx-era issue template, and 392 unreferenced images (about 83 MB). The originals remain in the [CyVerse repository](https://github.com/CyVerse-learning-materials/foss){target=_blank}.